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Andrew Mack

Mr Andrew Mack

Research student

School of Biosciences

cymraeg
Welsh speaking

Overview

I'm currently a PhD student within the Microbiomes, Microbes and Informatics (MMI) research unit in the School of Biosciences.

My doctoral research is focused on Severe Acute Respiratory Syndrome Coronavirus type 2 (SARS-CoV-2), where I'm studying how its genome has changed during the course of the pandemic (evolution) and whether there are particular changes within the replication proteins that facilitate this. I'm also analysing viral genomic data (COG-UK and GISAID) and clinical patient data (SAIL) using machine learning techniques to determine whether certain mutations within the SARS-CoV-2 genome result in more severe disease (virulence). I'm also looking to identify whether certain clinical and individual factors relating to the patient (e.g. age, co-morbidities, socio-economic status) can also predict the outcome of individuals infected with SARS-CoV-2 and thus the severity of COVID-19 on case-by-case basis.

I have previous experience in both academic and clinical settings. From 2016-2020 I trained and worked from Public Health Wales as a Biomedical Scientist where I have developed, validated and deployed diagnostic services within the fields of bacteriology and virology. In 2020 I was a key member PHWs national response to the SARS-CoV-2 emergency and assisted in deploying the national testing effort. Prior to this, I worked within the field of sexually transmitted infections and antimicrobial resistance and was responsible for validating and operating the national Mycoplasma Genitalium testing service for Wales.

I am keen to engage the public in science, particularly in microbiology. Along with academics from Cardiff Metropolitan University I've ran several public engagement "tents". In 2016 we were residents within Einsteins Garden at Green Man Festival (Brecon Beacons) where the public were invited into our "Micrographia" lab to look at pollen and insects under the microscope. Following this we were invited to brin the tent to How The Light Gets In Festival (Hay-on-Wye). Since 2018 I have been active in running the science programme at Between The Trees Festival (Candleston) where we host an array of engaging scientific talks and activities over a weekend in Merthyr Mawr Nature Reserve.

Publication

2023

2022

2021

Articles

Research

  • Infectious disease epidemiology
  • Pathogen evolution
  • Host/pathogen interactions
  • Drivers of genetic variation within pathogens
  • Pathogen replication systems and proofreading
  • Antimicrobial resistance
  • Computational methodologies
  • Machine learning
  • Novel diagnostic methodologies
  • Next generation sequencing
  • Phylogenetics

Thesis

Examination of SARS-CoV-2 severity, transmissibility and spread within Wales through the analysis of linked patient health records and genomic sequence data

External profiles