Alex Hardisty

2022

• Wittenburg, P., Hardisty, A., Le Franc, Y., Mozaffari, A., Peer, L., Skvortsov, N. A. and Zhao, Z. 2022. Canonical workflows to make data FAIR. Data Intelligence 4(2), pp. 286-305. (10.1162/dint_a_00132)
• Hardisty, A. et al. 2022. The specimen data refinery: a canonical workflow framework and FAIR digital object approach to speeding up digital mobilisation of natural history collections. Data Intelligence 4(2), pp. 320-341. (10.1162/dint_a_00134)
• Nieva De La Hidalga, A. et al. 2022. Cross-validation of a semantic segmentation net-work for natural history collection specimens. Machine Vision and Applications 33, article number: 39. (10.1007/s00138-022-01276-z)
• Wittenburg, P. et al. 2022. FAIR digital object demonstrators 2021. Technical Report.

2021

• Hardisty, A. and Haston, E. M. 2021. MIDS Level 1: Specification, conformance checklist, mapping template and instructions for use. Presented at: TDWG 2021, Virtual, 18-22 Oct 2021Biodiversity Information Science and Standards, Vol. 5. Vol. e75574. Pensoft, (10.3897/biss.5.75574)
• Grieb, J., Weiland, C., Hardisty, A., Addink, W., Islam, S., Younis, S. and Schmidt, M. 2021. Machine learning as a service for DiSSCo’s digital specimen architecture. Presented at: TDWG 2021, Virtual, 18-22 Oct 2021Biodiversity Information Science and Standards, Vol. 5. Vol. e75634. Pensoft, (10.3897/biss.5.75634)
• Buschbom, J. et al. 2021. Participative decision making and the sharing of benefits: laws, ethics, and data protection for building extended global communities. Presented at: TDWG 2021, Virtual, 18-22 Oct 2021Biodiversity Information Science and Standards, Vol. 5. Vol. e75168. Pensoft, (10.3897/biss.5.75168)
• Ellwood, E. R. et al. 2021. Highlights and outcomes of the 2021 Global Community Consultation. Presented at: TDWG 2021, Virtual, 18-22 Oct 2021Biodiversity Information Science and Standards, Vol. 5. Vol. e72716. Pensoft, (10.3897/biss.5.72716)
• Hardisty, A. R., Addink, W., Glöckler, F., Güntsch, A., Islam, S. and Weiland, C. 2021. A choice of persistent identifier schemes for the Distributed System of Scientific Collections (DiSSCo). Research Ideas and Outcomes 7, article number: e67379. (10.3897/rio.7.e67379)

2020

• Hardisty, A. and Wittenburg, P. 2020. Canonical Workflow Framework for Research (CWFR) - position paper - version 2 December 2020. Working paper. Center for Open Science OSFHome. Available at: https://osf.io/9e3vc/
• Islam, S., Hardisty, A., Addink, W., Weiland, C. and Glöckler, F. 2020. Incorporating RDA outputs in the design of a European Research Infrastructure for natural science collections. Data Science Journal 19(50), pp. 1-14. (10.5334/dsj-2020-050)
• Haston, E. M. and Hardisty, A. 2020. An introduction to the Minimum Information about a Digital Specimen (MIDS) digitisation standard.. Presented at: TDWG 2020 Annual Conference, Virtual, 21-25 September, 19-23 October 2020, Vol. 4. pp. e59214., (10.3897/biss.4.59214)
• Addink, W. and Hardisty, A. 2020. ‘openDS’ – progress on the new standard for digital specimens.. Presented at: TDWG 2020 Annual Conference, Virtual, 21-25 September, 19-23 October 2020, Vol. 4. pp. e59338., (10.3897/biss.4.59338)
• Hardisty, A., Livermore, L., Walton, S., Woodburn, M. and Hardy, H. 2020. Costbook of the digitisation infrastructure of DiSSCo. Research Ideas and Outcomes 6, article number: e58915. (10.3897/rio.6.e58915)
• Owen, D. et al. 2020. Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections.[Version 2]. Research Ideas and Outcomes 6, article number: e58030. (10.3897/rio.6.e58030)
• Nieva De La Hidalga, A., Hardisty, A., Martin, P., Magagna, B. and Zhao, Z. 2020. The ENVRI reference model. In: Zhao, Z. and Hellström, M. eds. Towards Interoperable Research Infrastructures for Environmental and Earth Sciences - A Reference Model Guided Approach for Common Challenges. Lecture Notes in Computer Science Vol. 12003. Cham, Switzerland: Springer Professional, pp. 61-81.
• Owen, D. et al. 2020. Towards a scientific workflow featuring Natural Language Processing for the digitisation of natural history collections [Version 1]. Research Ideas and Outcomes 6, article number: e55789. (10.3897/rio.6.e55789)
• Lannom, L., Koureas, D. and Hardisty, A. 2020. FAIR data and services in biodiversity science and geoscience. Data Intelligence 2(1-2), pp. 122-130. (10.1162/dint_a_00034)
• Hardisty, A. et al. 2020. Conceptual design blueprint for the DiSSCo digitization infrastructure - DELIVERABLE D8.1. Research Ideas and Outcomes 6, article number: e54280. (10.3897/rio.6.e54280)

2019

• Raes, N., van Egmond, E., Addink, W. and Hardisty, A. 2019. Requirement analysis for the DiSSCo research infrastructure. Presented at: Biodiversity_Next 2019, Leiden, The Netherlands, 21-25 October 2019Biodiversity Information Science and Standards, Vol. 3. https://biss.pensoft.net/: Pensoft pp. e37892., (10.3897/biss.3.37892)
• Nieva De La Hidalga, A. and Hardisty, A. 2019. Making heterogeneous specimen data ‘FAIR’: Implementing a digital specimen repository. Presented at: Biodiversity_Next 2019, Leiden, The Netherlands, 21-25 October 2019Biodiversity Information Science and Standards, Vol. 3. https://biss.pensoft.net/: Pensoft pp. e37163., (10.3897/biss.3.37163)
• Hardisty, A., Ma, K., Nelson, G. and Fortes, J. 2019. ‘openDS’ – A new standard for digital specimens and other natural science digital object types. Presented at: Biodiversity_Next 2019, Leiden, The Netherlands, 21-25 October 2019Biodiversity Information Science and Standards, Vol. 3. https://biss.pensoft.net/: Pensoft pp. e37033., (10.3897/biss.3.37033)
• Hardisty, A., Lannom, L., Koureas, D., Addink, W. and Weiland, C. 2019. ‘The Last Mile’: The registry behind the identifier [Conference Abstract]. Presented at: Biodiversity_Next 2019, Leiden, The Netherlands, 21-25 October 2019Biodiversity Information Science and Standards, Vol. 3. Vol. e37034. Pensoft pp. -., (10.3897/biss.3.37034)
• Dillen, M. et al. 2019. A benchmark dataset of herbarium specimen images with label data. Biodiversity Data Journal 7, article number: e31817. (10.3897/BDJ.7.e31817)
• Hardisty, A., Belbin, L., Hobern, D., McGeoch, M. A., Pirzl, R., Williams, K. J. and Kissling, W. D. 2019. Research infrastructure challenges in preparing essential biodiversity variables data products for alien invasive species. Environmental Research Letters 14, article number: 25005. (10.1088/1748-9326/aaf5db)
• Hardisty, A. et al. 2019. The Bari Manifesto: an interoperability framework for essential biodiversity variables. Ecological Informatics 49, pp. 22-31. (10.1016/j.ecoinf.2018.11.003)

2018

• Stocker, M., Paasonen, P., Fiebig, M., Zaidan, M. A. and Hardisty, A. 2018. Curating scientific information in knowledge infrastructures. Data Science Journal 17, article number: 21. (10.5334/dsj-2018-021)
• Constantin, A., Nieva De La Hidalga, A., Hardisty, A. and Atkinson, A. 2018. Using persona as lenses for a reference model. Presented at: HCI '18 32nd International BCS Human Computer Interaction Conference, Belfast, UK, 4-6 July 2018HCI '18 Proceedings of the 32nd International BCS Human Computer Interaction Conference. ACM Digital Library: BCS Learning & Development Ltd., Swindon, UK, (10.14236/ewic/HCI2018.138)
• Koureas, D., Addink, W. and Hardisty, A. 2018. Digital Object Cloud for linking natural science collections information; The case of DiSSCo. Biodiversity Information Science and Standards 2, article number: e25474. (10.3897/biss.2.25474)
• Kissling, W. D. et al. 2018. Building essential biodiversity variables (EBVs) of species distribution and abundance at a global scale.. Biological Reviews of the Cambridge Philosophical Society 93(1), pp. 600-625. (10.1111/brv.12359)

2017

• Nieva De La Hidalga, A. et al. 2017. The ENVRI Reference Model (ENVRI RM) version 2.2, 30th October 2017. Documentation. Zenodo. Available at: https://doi.org/10.5281/zenodo.1050349
• Martin, P., Chen, Y., Hardisty, A., Jeffery, K. and Zhao, Z. 2017. Computational challenges in global environmental research infrastructures. In: Chabbi, A. and Loescher, H. W. eds. Terrestrial Ecosystem Research Infrastructures: Challenges and Opportunities. Boca Raton, FL. USA: CRC Press, Taylor & Francis Group, pp. 305-340., (10.1201/9781315368252-16)

2016

• Zhao, Z. et al. 2016. Time critical requirements and technical considerations for advanced support environments for data-intensive research. Presented at: 2nd International Workshop on Interoperable infrastructures for interdisciplinary big data sciences (IT4RIs 16), IEEE Real-Time Systems Symposium (RTSS) 2016, Porto, Portugal, 29th November - 2nd December 2016Proceedings of 2nd International Workshop on Interoperable infrastructures for interdisciplinary big data sciences (IT4RIs 16) in the context of IEEE Real-time System Symposium (RTSS). Zenodo, (10.5281/zenodo.204756)
• Arvanitidis, C. et al. 2016. LifeWatchGreece: Construction and operation of the National Research Infrastructure (ESFRI). Biodiversity Data Journal 4, article number: e10791. (10.3897/BDJ.4.e10791)
• Hardisty, A. R. et al. 2016. BioVeL: A virtual laboratory for data analysis and modelling in biodiversity science and ecology.. BMC Ecology 16, article number: 49. (10.1186/s12898-016-0103-y)
• Hardisty, A. and Manset, D. 2016. GLOBIS-B Deliverable D3.1: Technical issues and risks associated with general challenges of provisioning research infrastructures to deliver capabilities for EBV processing.. Technical Report.
• Nieva de la Hidalga, A., Hardisty, A. and Jones, A. 2016. SCRAM-CK: applying a collaborative requirements engineering process for designing a web based e-science toolkit. Requirements Engineering 21, pp. 107-129. (10.1007/s00766-014-0212-0)
• De Giovanni, R., Williams, A. R., Hernández Ernst, V., Kulawik, R., Quevedo Fernandez, F. and Hardisty, A. 2016. ENM Components: a new set of web service-based workflow components for ecological niche modelling. Ecography 39(4), pp. 376-383. (10.1111/ecog.01552)
• Koureas, D. et al. 2016. Unifying European biodiversity informatics (BioUnify). Research Ideas and Outcomes 2(e7787), pp. 1-24. (10.3897/rio.2.e7787)
• Koureas, D. et al. 2016. Community engagement: the ‘last mile’ challenge for European research e-infrastructures. Research Ideas and Outcomes 2, article number: e9933. (10.3897/rio.2.e9933)

2015

• Martin, P. et al. 2015. Open information linking for environmental research infrastructures. Presented at: IEEE 11th International Conference on eScience, Munich, Germany, 31 August 2015 - 4 September 2015e-Science (e-Science), 2015 IEEE 11th International Conference on. IEEE pp. 513-520., (10.1109/eScience.2015.66)
• Zhao, Z. et al. 2015. Reference model guided system design and implementation for interoperable environmental research infrastructures. Presented at: e-Science 2015: IEEE 11th International Conference on eScience, Munich, Germany, 31 August - 4 September 2015e-Science (e-Science), 2015 IEEE 11th International Conference on. IEEE pp. 551-556., (10.1109/eScience.2015.41)
• Leidenberger, S., Obst, M., Kulawik, R., Stelzer, K., Heyer, K., Hardisty, A. and Bourlat, S. J. 2015. Evaluating the potential of ecological niche modelling as a component in marine non-indigenous species risk assessments. Marine Pollution Bulletin 97(1-2), pp. 470-487. (10.1016/j.marpolbul.2015.04.033)
• Kissling, W. D. et al. 2015. Towards global interoperability for supporting biodiversity research on essential biodiversity variables (EBVs). Biodiversity 16(2-3), pp. 99-107. (10.1080/14888386.2015.1068709)

2014

• Hardisty, A. and Manset, D. 2014. CReATIVE-B Deliverable D3.2: Guidelines for interoperability for biodiversity and ecosystem research infrastructures. Technical Report.
• Alonso, E. et al. 2014. Flock together with CReATIVE-B: A roadmap of global research data infrastructures supporting biodiversity and ecosystem science. Project Report. Amsterdam: University of Amsterdam.
• Horváth, F. et al. 2014. Supporting environmental modelling with Taverna workflows, web services and desktop grid technology. Presented at: 7th International Congress on Environmental Modelling and Software (iEMSs), San Diego, California, USA, 15-19 June 2014 Presented at Ames, D., Quinn, N. W. T. and Rizzoli, A. E. eds.Proceedings of the 7th International Congress on Environmental Modelling and Software, June 15-19, San Diego, California, USA. International Environmental Modelling & Software Society

2013

• Chen, Y. et al. 2013. D3.4 ENVRI Reference Model V1.1. Project Report. ENVRI Project Collaboration.
• Wolstencroft, K. et al. 2013. The Taverna workflow suite: designing and executing workflows of Web Services on the desktop, web or in the cloud. Nucleic Acids Research 41(W1), pp. W557-W561. (10.1093/nar/gkt328)
• Hardisty, A., Roberts, D. and The Biodiversity Informatics Community, . 2013. A decadal view of biodiversity informatics: challenges and priorities. BMC Ecology 13(16), pp. 1-23. (10.1186/1472-6785-13-16)
• Chen, Y., Hardisty, A., Preece, A. D., Martin, P., Herbert Schentz, B., Zao, Z. and Legre, Y. 2013. Analysis of common requirements for environmental science research infrastructures. Presented at: International Symposium on Grids and Clouds 2013 (ISGC 2013),, Taipei, Taiwan, 17-22 March 2013.
• Chen, Y. et al. 2013. A common reference model for environmental science research infrastructures. Presented at: 27th International Conference on Informatics for Environmental Protection, University of Hamburg, Germany, 2-4 September 2013 Presented at Page, B. et al. eds.EnviroInfo 2013: Environmental Informatics and Renewable Energies, 27th International Conference on Informatics for Environmental Protection. Aachen: Shaker Verlag GmbH pp. 665-673.
• Field, L. et al. 2013. Realising the full potential of research data: common challenges in data management, sharing and integration across scientific disciplines.. Technical Report.
• Hobern, D. et al. 2013. Global Biodiversity Informatics Outlook: Delivering biodiversity knowledge in the information age. Project Report. [Online]. Copenhagen: Global Biodiversity Information Facility (Secretariat). Available at: http://www.biodiversityinformatics.org

2012

• Hardisty, A. and Manset, D. 2012. CReATIVE-B Deliverable D3.1: Comparison of technical basis of biodiversity e-infrastructures. Technical Report.
• Guntsch, A. et al. 2012. The BioVeL data refinement workflow for occurrence data. Presented at: TDWG Conference 2012, Beijing, China, 22-26 October 2012.
• Elwyn, G. et al. 2012. Detecting deterioration in patients with chronic disease using telemonitoring: navigating the 'trough of disillusionment'. Journal of Evaluation in Clinical Practice 18(4), pp. 896-903. (10.1111/j.1365-2753.2011.01701.x)
• Roberts, D. and Hardisty, A. 2012. Data accessibility: getting a handle on biological data [Letter]. Nature 484(7394), pp. 318. (10.1038/484318d)
• Gwilliams, C., Preece, A. D. and Hardisty, A. 2012. Local and global knowledge to improve the quality of sensed data. International Journal of Digital Information and Wireless Communications 2(2), pp. 164-180.
• Gwilliams, C., Preece, A. D., Hardisty, A., Goossens, B. and Ambu, L. 2012. K-HAS: an architecture for using local and global knowledge in wireless sensor networks. Presented at: The International Conference on Informatics & Applications, University Sultan Zainal Abidin, Kuala Terengganu, Malaysia, 3-5 June 2012.

2011

• Frenzel, M., Klotz, S., Hardisty, A. and Banki, O. 2011. LifeWatch – A European e-Science and observatory infrastructure supporting access and use of biodiversity and ecosystem data. Presented at: Data Repositories in Environmental Sciences, Rauischholzhausen, Germany, 28 February 2011. Nature Precedings, (10.1038/npre.2011.5843.1)
• Hardisty, A. et al. 2011. Bridging two translation gaps: a new informatics research agenda for telemonitoring of chronic disease. International Journal of Medical Informatics 80(10), pp. 734-744. (10.1016/j.ijmedinf.2011.07.002)
• Peirce, S. C., Hardisty, A., Preece, A. D. and Elwyn, G. 2011. Designing and implementing telemonitoring for early detection of deterioration in chronic disease: defining the requirements. Health informatics journal 17(3), pp. 173-190. (10.1177/1460458211409717)
• Vicanio, S., Hardisty, A. and Haitas, N. 2011. E-solutions for the management of biodiversity in the 21st century. EMBnet Journal 17(2), pp. 5-6.

2010

• 2010. LifeWatch deliverable 5.1.3: Technical construction plan –Reference Model. Project Report. Cardiff: Alex Hardisty.
• Jones, A. C., White, R. J., Giddy, J. P., Hardisty, A. and Raja, H. 2010. Evolution of the Catalogue of Life Architecture. Lecture Notes in Computer Science 6279, pp. 485-496. (10.1007/978-3-642-15384-6_52)
• Jones, A., White, R., Giddy, J. P., Hardisty, A. and Raja, H. 2010. Evolution of the catalogue of life architecture. Presented at: International Conference on Knowledge-Based and Intelligent Information & Engineering Systems, Cardiff, Wales, 8-10 September 2010.

2009

• Hardisty, A., Bánki, O., Los, W. and Poigné, A. 2009. LifeWatch deliverable 5.3.1: Technical construction plan: European strategies for local implementation ‐ “Thinking Globally, Acting Locally”. Project Report. Cardiff University.

2008

• Giddy, J. P. and Hardisty, A. 2008. e-Science infrastructure for biodiversity research. Presented at: International Workshop on Distributed Sensing and Collective Intelligence in Biodiversity Monitoring, Amsterdam, The Netherlands, 3-5 December 2008.
• Giddy, J. and Hardisty, A. 2008. LifeWatch deliverable 5.1.1: Data & Modelling Tool Structures – Showcases. Project Report. Cardiff: Cardiff University.
• Subramanian, M. et al. 2008. Novel sensor technology integration for outcome-based risk analysis in diabetes. Presented at: HealthINF 2008 : International Conference on Health Informatics, Funchal-Madeira, Portugal, 28-31 January, 2008.

2007

• Shaikh Ali, A., Rana, O. F., Hardisty, A., Subramanian, M., Luzio, S., Owens, D. R. and Conley, E. C. 2007. Portal technologies for patient-centred integrated care. Presented at: European Conference on eHealth, Oldenburg, Germany, 11-12 Oct 2007.

2006

• Subramanian, M., Shaikh Ali, A., Rana, O. F., Hardisty, A. and Conley, E. C. 2006. Healthcare@Home: research models for patient-centred healthcare services. Presented at: IEEE John Vincent Atanasoff International Symposium on Modern Computing JVA 2006, Sofia, Bulgaria, 3-6 Oct 2006.
• Osbourne, J. and Hardisty, A. 2006. Cardiff University’s Condor Pool: background, case studies, and fEC. Presented at: e-Science All Hands Meeting, Nottingam , UK, 18-21 September 2006.
• Pahwa, J. S. et al. 2006. Supporting the construction of workflows for biodiversity problem-solving accessing secure, distributed resources. Scientific programming 14(3-4), pp. 195-208.