Yr Athro Stan Marée

2021

• Champneys, A. R., Al Saadi, F., Breña-Medina, V. F., Grieneisen, V. A., Maree, A. F., Verschueren, N. and Wuyts, B. 2021. Bistability, wave pinning and localisation in natural reaction-diffusion systems. Physica D: Nonlinear Phenomena 416, article number: 132735. (10.1016/j.physd.2020.132735)

2019

• Lee, K. J. I. et al. 2019. Shaping of a three-dimensional carnivorous trap through modulation of a planar growth mechanism. PLoS Biology 17(10), article number: e3000427. (10.1371/journal.pbio.3000427)
• Li, X., Vroomans, R. M. A., Fox, S., Grieneisen, V. A., Ostergaard, L. and Maree, A. F. M. 2019. Systems biology approach pinpoints minimum requirements for auxin distribution during fruit opening. Molecular Plant 12(6), pp. 863-878. (10.1016/j.molp.2019.05.003)

2018

• Fox, S. et al. 2018. Spatiotemporal coordination of cell division and growth during organ morphogenesis. PLoS Biology 16(11), article number: e2005952. (10.1371/journal.pbio.2005952)
• Tomkins, M., Kliot, A., Maree, A. F. M. and Hogenhout, S. A. 2018. A multi-layered mechanistic modelling approach to understand how effector genes extend beyond phytoplasma to modulate plant hosts, insect vectors and the environment. Current Opinion in Plant Biology 44, pp. 39-48. (10.1016/j.pbi.2018.02.002)
• Sánchez-Corrales, Y. E., Hartley, M., van Rooij, J., Maree, A. F. M. and Grieneisen, V. A. 2018. Morphometrics of complex cell shapes: lobe contribution elliptic Fourier analysis (LOCO-EFA). Development 145(6), article number: dev156778. (10.1242/dev.156778)

2017

• Carter, R., Sánchez-Corrales, Y. E., Hartley, M., Grieneisen, V. A. and Maree, A. F. M. 2017. Pavement cells and the topology puzzle. Development 144(23), pp. 4386-4397. (10.1242/dev.157073)
• Di Mambro, R. et al. 2017. Auxin minimum triggers the developmental switch from cell division to cell differentiation in the Arabidopsis root. Proceedings of the National Academy of Sciences 114(36), pp. E7641-E7649. (10.1073/pnas.1705833114)
• Sotta, N., Duncan, S., Tanaka, M., Sato, T., Maree, A. F. . M., Fujiwara, T. and Grieneisen, V. A. 2017. Rapid transporter regulation prevents substrate flow traffic jams in boron transport. eLife 6, article number: e27038. (10.7554/eLife.27038)
• Gadhamsetty, S., Maree, A., Beltman, J. and de Boer, R. 2017. A sigmoid functional response emerges when Cytotoxic T Lymphocytes start killing fresh target cells. Biophysical Journal 112(6), pp. 1221-1235. (10.1016/j.bpj.2017.02.008)
• Gadhamsetty, S., Maree, A. F. M., de Boer, R. J. and Beltman, J. B. 2017. Tissue dimensionality influences the functional response of cytotoxic T lymphocyte-mediated killing of targets. Frontiers in Immunology 7, article number: 668. (10.3389/fimmu.2016.00668)

2016

• Abley, K., Sauret-Gueto, S., Maree, A. F. M. and Coen, E. 2016. Formation of polarity convergences underlying shoot outgrowths. eLife 5, article number: e18165. (10.7554/eLife.18165)

2015

• el-Showk, S., Help-Rinta-Rahko, H., Blomster, T., Siligato, R., Maree, A., Mahonen, A. and Grieneisen, V. 2015. Parsimonious model of vascular patterning links transverse hormone fluxes to lateral root initiation: auxin leads the way, while cytokinin levels out. PLoS Computational Biology 11(10), pp. -. (10.1371/journal.pcbi.1004450)
• Polko, J. et al. 2015. Ethylene-mediated regulation of A2-type CYCLINs modulates hyponastic growth in arabidopsis. Plant Physiology 169(1), pp. 194-208. (10.1104/pp.15.00343)
• Magno, R., Grieneisen, V. and Maree, A. 2015. The biophysical nature of cells: Potential cell behaviours revealed by analytical and computational studies of cell surface mechanics. BMC Biophysics 8(1), pp. -. (10.1186/s13628-015-0022-x)
• Shimotohno, A., Sotta, N., Sato, T., De Ruvo, M., Maree, A., Grieneisen, V. and Fujiwara, T. 2015. Mathematical modeling and experimental validation of the spatial distribution of boron in the root of arabidopsis thaliana identify high boron accumulation in the tip and predict a distinct root tip uptake function. Plant and Cell Physiology 56(4), pp. 620-630. (10.1093/pcp/pcv016)

2014

• Gadhamsetty, S., Maree, A., Beltman, J. and De Boer, R. 2014. A general functional response of cytotoxic T lymphocyte-mediated killing of target cells. Biophysical Journal 106(8), pp. 1780-1791. (10.1016/j.bpj.2014.01.048)

2013

• Grieneisen, V., Maree, A. and Østergaard, L. 2013. Juicy stories on female reproductive tissue development: Coordinating the hormone flows. Journal of Integrative Plant Biology 55(9), pp. 847-863. (10.1111/jipb.12092)
• Abley, K. et al. 2013. An intracellular partitioning-based framework for tissue cell polarity in plants and animals. Development 140(10), pp. 2061-2074. (10.1242/dev.062984)

2012

• Ariotti, S. et al. 2012. Tissue-resident memory CD8+ T cells continuously patrol skin epithelia to quickly recognize local antigen. Proceedings of the National Academy of Sciences of the United States of America 109(48), pp. 19739-19744. (10.1073/pnas.1208927109)
• Vroomans, R., Maree, A., de Boer, R. and Beltman, J. 2012. Chemotactic Migration of T Cells towards Dendritic Cells Promotes the Detection of Rare Antigens. PLoS Computational Biology 8(11), pp. -., article number: e1002763. (10.1371/journal.pcbi.1002763)
• Walther, G., Maree, A., Edelstein-Keshet, L. and Grieneisen, V. 2012. Deterministic Versus Stochastic Cell Polarisation Through Wave-Pinning. Bulletin of Mathematical Biology 74(11), pp. 2570-2599. (10.1007/s11538-012-9766-5)
• Cruz-Ramirez, A. et al. 2012. A bistable circuit involving SCARECROW-RETINOBLASTOMA integrates cues to inform asymmetric stem cell division. Cell 150(5), pp. 1002-1015. (10.1016/j.cell.2012.07.017)
• Grieneisen, V. A., Scheres, B., Hogeweg, P. and Maree, A. F. M. 2012. Morphogengineering roots: comparing mechanisms of morphogen gradient formation. BMC Systems Biology 6, pp. -., article number: 37. (10.1186/1752-0509-6-37)
• Maree, A., Grieneisen, V. and Edelstein-Keshet, L. 2012. How cells integrate complex stimuli: The effect of feedback from phosphoinositides and cell shape on cell polarization and motility. PLoS Computational Biology 8(3), pp. -. (10.1371/journal.pcbi.1002402)

2011

• Polko, J., van Zanten, M., van Rooij, J., Maree, A., Voesenek, L., Peeters, A. and Pierik, R. 2011. Ethylene-induced differential petiole growth in Arabidopsis thaliana involves local microtubule reorientation and cell expansion. New Phytologist 193(2), pp. 339-348. (10.1111/j.1469-8137.2011.03920.x)

2009

• Beltman, J., Maree, A. and De Boer, R. 2009. Analysing immune cell migration. Nature Reviews Immunology 9(11), pp. 789-798. (10.1038/nri2638)
• Marmottant, P. et al. 2009. The role of fluctuations and stress on the effective viscosity of cell aggregates. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 106(41), pp. 17271-17275. (10.1073/pnas.0902085106)
• Beltman, J., Henrickson, S., von Andrian, U., de Boer, R. and Maree, A. 2009. Towards estimating the true duration of dendritic cell interactions with T cells. Journal of Immunological Methods 347(1-2), pp. 54-69. (10.1016/j.jim.2009.05.013)

2008

• Laskowski, M., Grieneisen, V. A., Hofhuis, H., ten Hove, C. A., Hogeweg, P., Maree, A. F. M. and Scheres, B. 2008. Root system architecture from coupling cell shape to auxin transport. PLoS Biology 6(12), pp. 2721-2735., article number: e307. (10.1371/journal.pbio.0060307)
• Maree, A., Komba, M., Finegood, D. and Edelstein-Keshet, L. 2008. A quantitative comparison of rates of phagocytosis and digestion of apoptotic cells by macrophages from normal (BALB/c) and diabetes-prone (NOD) mice. Journal of Applied Physiology 104(1), pp. 157-169. (10.1152/japplphysiol.00514.2007)

2007

• Kafer, J., Hayashi, T., Maree, A., Carthew, R. and Graner, F. 2007. Cell adhesion and cortex contractility determine cell patterning in the Drosophila retina. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 104(47), pp. 18549-18554. (10.1073/pnas.0704235104)
• Grieneisen, V., Xu, J., Maree, A., Hogeweg, P. and Scheres, B. 2007. Auxin transport is sufficient to generate a maximum and gradient guiding root growth. Nature 449(7165), pp. 1008-1013. (10.1038/nature06215)
• Jilkine, A., Maree, A. and Edelstein-Keshet, L. 2007. Mathematical model for spatial segregation of the Rho-family GTPases based on inhibitory crosstalk. Bulletin of Mathematical Biology 69(6), pp. 1943-1978. (10.1007/s11538-007-9200-6)
• Beltman, J., Maree, A. and De Boer, R. 2007. Spatial modelling of brief and long interactions between T cells and dendritic cells. Immunology and Cell Biology 85(4), pp. 306-314. (10.1038/sj.icb.7100054)
• Beltman, J., Maree, A., Lynch, J., Miller, M. and De Boer, R. 2007. Lymph node topology dictates T cell migration behavior. Journal of Experimental Medicine 204(4), pp. 771-780. (10.1084/jem.20061278)

2006

• Maree, A., Jilkine, A., Dawes, A., Grieneisen, V. and Edelstein-Keshet, L. 2006. Polarization and movement of keratocytes: A multiscale modelling approach. Bulletin of Mathematical Biology 68(5), pp. 1169-1211. (10.1007/s11538-006-9131-7)
• Kafer, J., Hogeweg, P. and Maree, A. 2006. Moving forward moving backward: Directional sorting of chemotactic cells due to size and adhesion differences. PLoS Computational Biology 2(6), pp. 0518-0529. (10.1371/journal.pcbi.0020056)
• Maree, A., Santamaria, P. and Edelstein-Keshet, L. 2006. Modeling competition among autoreactive CD8+ T cells in autoimmune diabetes: Implications for antigen-specific therapy. International Immunology 18(7), pp. 1067-1077. (10.1093/intimm/dxl040)
• Maree, A., Kublik, R., Finegood, D. and Edelstein-Keshet, L. 2006. Modelling the onset of Type 1 diabetes: Can impaired macrophage phagocytosis make the difference between health and disease?. Philosophical Transactions A: Mathematical, Physical and Engineering Sciences 364(1842), pp. 1267-1282. (10.1098/rsta.2006.1769)

2005

• Groenenboom, M., Maree, A. and Hogeweg, P. 2005. The RNA silencing pathway: The bits and pieces that matter. PLoS Computational Biology 1(2), pp. 0155-0165. (10.1371/journal.pcbi.0010021)
• Han, B., Serra, P., Amrani, A., Yamanouchi, J., Maree, A., Edelstein-Keshet, L. and Santamaria, P. 2005. Prevention of diabetes by manipulation of anti-IGRP autoimmunity: High efficiency of a low-affinity peptide. Nature Medicine 11(6), pp. 645-652. (10.1038/nm1250)
• Maree, A., Komba, M., Dyck, C., Łabęcki, M., Finegood, D. and Edelstein-Keshet, L. 2005. Quantifying macrophage defects in type 1 diabetes. Journal of Theoretical Biology 233(4), pp. 533-551. (10.1016/j.jtbi.2004.10.030)

2002

• Maree, A. and Hogeweg, P. 2002. Modelling Dictyostelium discoideum morphogenesis: The culmination. Bulletin of Mathematical Biology 64(2), pp. 327-353. (10.1006/bulm.2001.0277)

2001

• Maree, A. and Hogeweg, P. 2001. How amoeboids self-organize into a fruiting body: Multicellular coordination in Dictyostelium discoideum. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 98(7), pp. 3879-3883. (10.1073/pnas.061535198)
• Muller, V., Maree, A. and De Boer, R. 2001. Release of virus from lymphoid tissue affects human immunodeficiency virus type 1 and hepatitis C virus kinetics in the blood. Journal of Virology 75(6), pp. 2597-2603. (10.1128/JVI.75.6.2597-2603.2001)
• Muller, V., Maree, A. and De Boer, R. 2001. Small variations in multiple parameters account for wide variations in HIV-1 set-points: A novel modelling approach. Proceedings of the Royal Society B: Biological Sciences 268(1464), pp. 235-242. (10.1098/rspb.2000.1358)

2000

• Maree, A., Keulen, W., Boucher, C. and De Boer, R. 2000. Estimating relative fitness in viral competition experiments. Journal of Virology 74(23), pp. 11067-11072. (10.1128/JVI.74.23.11067-11072.2000)

1999

• Maree, A., Panfilov, A. and Hogeweg, P. 1999. Migration and thermotaxis of dictyostelium discoideum slugs, a model study. Journal of Theoretical Biology 199(3), pp. 297-309. (10.1006/jtbi.1999.0958)
• Maree, A., Panfilov, A. and Hogeweg, P. 1999. Phototaxis during the slug stage of Dictyostelium discoideum: A model study. Proceedings of the Royal Society B: Biological Sciences 266(1426), pp. 1351-1360. (10.1098/rspb.1999.0787)

1998

• Van Wezel, R., Lankheet, M., Verstraten, F., Maree, A. and Van De Grind, W. 1998. Responses of complex cells in area 17 of the cat to bi-vectorial transparent motion. Vision Research 36(18), pp. 2805-2813. (10.1016/0042-6989(95)00324-X)

1997

• Maree, A. and Panfilov, A. 1997. Spiral breakup in excitable tissue due to lateral instability. Physical review letters 78(9), pp. 1819-1822. (10.1103/PhysRevLett.78.1819)